robotpkg/wip/sot-dynamic-pinocchio-v3 bulk build results

=> Checking for clear installation ===> Installing bootstrap dependencies for sot-dynamic-pinocchio-v3-3.6.5r2 => Installing /opt/robotpkg/var/lib/robotpkg/packages/bsd/NetBSD-10.0-x86_64/All/digest-20080510.tgz => Installing /opt/robotpkg/var/lib/robotpkg/packages/bsd/NetBSD-10.0-x86_64/All/tnftp-20151004~ssl.tgz ===> Checking bootstrap dependencies for sot-dynamic-pinocchio-v3-3.6.5r2 => Required robotpkg package digest>=20080510: digest-20080510 found => Required robotpkg package tnftp>=20130505~ssl: tnftp-20151004~ssl found => Required system package gzip: gzip-20240203 found => Required system package pax and tar archivers: pax found => Required system package pkg_install>=20110805.12: pkg_install-20211115.3 found ===> Done bootstrap-depends for sot-dynamic-pinocchio-v3-3.6.5r2 ===> Installing full dependencies for sot-dynamic-pinocchio-v3-3.6.5r2 => Installing /opt/robotpkg/var/lib/robotpkg/packages/bsd/NetBSD-10.0-x86_64/All/coal-3.0.0r1.tgz => Dependency digest-20080510 already installed => Installing /opt/robotpkg/var/lib/robotpkg/wip/packages/bsd/NetBSD-10.0-x86_64/All/dynamic-graph-v3-4.4.3.tgz => Dependency octomap-1.10.0 already installed => Installing /opt/robotpkg/var/lib/robotpkg/packages/bsd/NetBSD-10.0-x86_64/All/pinocchio-3.3.0.tgz => Installing /opt/robotpkg/var/lib/robotpkg/wip/packages/bsd/NetBSD-10.0-x86_64/All/py311-sot-core-v3-4.11.8r2.tgz => Installing /opt/robotpkg/var/lib/robotpkg/wip/packages/bsd/NetBSD-10.0-x86_64/All/py311-sot-tools-v3-2.3.5r4.tgz => Dependency tnftp-20151004~ssl already installed => Dependency urdfdom-4.0.1 already installed ===> Checking build options for sot-dynamic-pinocchio-v3-3.6.5r2 => Building with no option. ===> Checking alternatives for sot-dynamic-pinocchio-v3-3.6.5r2 => Use the GNU C++ compiler: c++-compiler provided by g++>=3 => Use the GNU C compiler: c-compiler provided by gcc>=3 => Use python-3.11: python>=2.5 provided by python311>=3.11<3.12 ===> Checking dependencies for sot-dynamic-pinocchio-v3-3.6.5r2 => Required system package cmake>=3.10: cmake-3.29.6 found => Required system package doxygen>=1.5: doxygen-1.11.0 found => Required system package eigen3>=3.0.0: eigen3-3.4.0 found => Required system package g++>=3: g++-10.5.0 found => Required system package gcc>=3: gcc-10.5.0 found => Required system package graphviz>=2: graphviz-10.0.1 found => Required system package libstdc++: libstdc++ found => Required system package pkg-config>=0.22: pkg-config-2.2.0 found => Required system package python311>=3.11<3.12: python311-3.11.9 found => Required system package tinyxml>=2: tinyxml-2.6.2 found => Required robotpkg package coal>=3: coal-3.0.0r1 found => Required robotpkg package dynamic-graph-v3>=4.3.0: dynamic-graph-v3-4.4.3 found => Required robotpkg package octomap>=1.6.0: octomap-1.10.0 found => Required robotpkg package pinocchio>=2.3: pinocchio-3.3.0 found => Required robotpkg package py311-sot-core-v3>=4.11.7<5.0.0: py311-sot-core-v3-4.11.8r2 found => Required robotpkg package py311-sot-tools-v3>=2.0: py311-sot-tools-v3-2.3.5r4 found => Required robotpkg package urdfdom>=0.2.8: urdfdom-4.0.1 found ===> Done depends for sot-dynamic-pinocchio-v3-3.6.5r2 ===> Extracting for sot-dynamic-pinocchio-v3-3.6.5r2 => SHA1 checksums OK => RMD160 checksums OK x sot-dynamic-pinocchio-3.6.5/ x sot-dynamic-pinocchio-3.6.5/.git-blame-ignore-revs x sot-dynamic-pinocchio-3.6.5/.travis/ x sot-dynamic-pinocchio-3.6.5/.travis/build x sot-dynamic-pinocchio-3.6.5/src/ x sot-dynamic-pinocchio-3.6.5/src/zmp-from-forces.h x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/ x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/sot/ x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/sot/dynamic_pinocchio/ x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/sot/dynamic_pinocchio/kine_romeo.py x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/sot/dynamic_pinocchio/humanoid_robot.py x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/sot/dynamic_pinocchio/__init__.py x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/sot/dynamic_pinocchio/kine_romeo_small.py x sot-dynamic-pinocchio-3.6.5/src/dynamic_graph/sot/dynamic_pinocchio/tools.py x sot-dynamic-pinocchio-3.6.5/src/waist-attitude-from-sensor.cpp x sot-dynamic-pinocchio-3.6.5/src/integrator-force-rk4.cpp x sot-dynamic-pinocchio-3.6.5/src/integrator-force.cpp x sot-dynamic-pinocchio-3.6.5/src/CMakeLists.txt x sot-dynamic-pinocchio-3.6.5/src/waist-attitude-from-sensor-python.hh x sot-dynamic-pinocchio-3.6.5/src/mass-apparent-python.hh x sot-dynamic-pinocchio-3.6.5/src/zmp-from-forces-python.hh x sot-dynamic-pinocchio-3.6.5/src/mass-apparent.cpp x sot-dynamic-pinocchio-3.6.5/src/integrator-force-python.hh x sot-dynamic-pinocchio-3.6.5/src/dynamic-python-module-py.cc x sot-dynamic-pinocchio-3.6.5/src/integrator-force-exact-python.hh x sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp x sot-dynamic-pinocchio-3.6.5/src/integrator-force-rk4-python.hh x sot-dynamic-pinocchio-3.6.5/src/zmpreffromcom-python.hh x sot-dynamic-pinocchio-3.6.5/src/force-compensation.cpp x sot-dynamic-pinocchio-3.6.5/src/dynamic-command.h x sot-dynamic-pinocchio-3.6.5/src/integrator-force-exact.cpp x sot-dynamic-pinocchio-3.6.5/src/zmpreffromcom.cpp x sot-dynamic-pinocchio-3.6.5/src/matrix-inertia.cpp x sot-dynamic-pinocchio-3.6.5/src/dynamic.cpp x sot-dynamic-pinocchio-3.6.5/src/angle-estimator-python.hh x sot-dynamic-pinocchio-3.6.5/src/zmp-from-forces.cpp x sot-dynamic-pinocchio-3.6.5/src/angle-estimator-command.h x sot-dynamic-pinocchio-3.6.5/src/angle-estimator.cpp x sot-dynamic-pinocchio-3.6.5/AUTHORS x sot-dynamic-pinocchio-3.6.5/.gitmodules x sot-dynamic-pinocchio-3.6.5/.gitignore x sot-dynamic-pinocchio-3.6.5/CMakeLists.txt x sot-dynamic-pinocchio-3.6.5/LICENSE x sot-dynamic-pinocchio-3.6.5/.version x sot-dynamic-pinocchio-3.6.5/README.md x sot-dynamic-pinocchio-3.6.5/.pre-commit-config.yaml x sot-dynamic-pinocchio-3.6.5/ChangeLog x sot-dynamic-pinocchio-3.6.5/.mailmap x sot-dynamic-pinocchio-3.6.5/pyproject.toml x sot-dynamic-pinocchio-3.6.5/.travis.yml x sot-dynamic-pinocchio-3.6.5/package.xml x sot-dynamic-pinocchio-3.6.5/tests/ x sot-dynamic-pinocchio-3.6.5/tests/test_results.cpp x sot-dynamic-pinocchio-3.6.5/tests/test_djj.cpp x sot-dynamic-pinocchio-3.6.5/tests/CMakeLists.txt x sot-dynamic-pinocchio-3.6.5/tests/test_constructor.cpp x sot-dynamic-pinocchio-3.6.5/tests/python/ x sot-dynamic-pinocchio-3.6.5/tests/python/CMakeLists.txt x sot-dynamic-pinocchio-3.6.5/tests/python/reach_right_hand.py x sot-dynamic-pinocchio-3.6.5/tests/python/humanoid_robot.py x sot-dynamic-pinocchio-3.6.5/tests/python/reach_both_hands.py x sot-dynamic-pinocchio-3.6.5/tests/python/feet_follower.py x sot-dynamic-pinocchio-3.6.5/tests/python/r2d2.urdf x sot-dynamic-pinocchio-3.6.5/tests/python/reach_left_hand.py x sot-dynamic-pinocchio-3.6.5/tests/kineromeo.py x sot-dynamic-pinocchio-3.6.5/tests/kinetalos.py x sot-dynamic-pinocchio-3.6.5/tests/test_dyn.cpp x sot-dynamic-pinocchio-3.6.5/tests/dummy.cpp x sot-dynamic-pinocchio-3.6.5/include/ x sot-dynamic-pinocchio-3.6.5/include/sot/ x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/ x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/mass-apparent.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/integrator-force.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/integrator-force-exact.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/angle-estimator.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/waist-attitude-from-sensor.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/zmpreffromcom.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/force-compensation.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/matrix-inertia.h x sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/integrator-force-rk4.h x sot-dynamic-pinocchio-3.6.5/.gitlab-ci.yml x sot-dynamic-pinocchio-3.6.5/doc/ x sot-dynamic-pinocchio-3.6.5/doc/Doxyfile.extra.in x sot-dynamic-pinocchio-3.6.5/doc/pictures/ x sot-dynamic-pinocchio-3.6.5/doc/pictures/footer.jpg x sot-dynamic-pinocchio-3.6.5/doc/pictures/HRP2.jpg x sot-dynamic-pinocchio-3.6.5/doc/pictures/footer.txt x sot-dynamic-pinocchio-3.6.5/doc/additionalDoc/ x sot-dynamic-pinocchio-3.6.5/doc/additionalDoc/package.hh x sot-dynamic-pinocchio-3.6.5/NEWS x sot-dynamic-pinocchio-3.6.5/setup.cfg x sot-dynamic-pinocchio-3.6.5/cmake/ x sot-dynamic-pinocchio-3.6.5/cmake/.git-blame-ignore-revs x sot-dynamic-pinocchio-3.6.5/cmake/dynamic_graph/ x sot-dynamic-pinocchio-3.6.5/cmake/dynamic_graph/submodule/ x sot-dynamic-pinocchio-3.6.5/cmake/dynamic_graph/submodule/__init__.py.cmake x sot-dynamic-pinocchio-3.6.5/cmake/dynamic_graph/python-module-py.cc.in x 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sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/o.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/fr.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/w.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/m.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/b.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/f.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/d.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/MathJax/jax/input/MathML/entities/r.js x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/style.rtf x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/header.html x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/doxygen.css x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/footer.html x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/header.tex x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/style.tex x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/doxyfile.awk x sot-dynamic-pinocchio-3.6.5/cmake/doxygen/tabs.css x sot-dynamic-pinocchio-3.6.5/cmake/stubgen/ x sot-dynamic-pinocchio-3.6.5/cmake/stubgen/CMakeLists.txt.in x sot-dynamic-pinocchio-3.6.5/cmake/announce-gen x sot-dynamic-pinocchio-3.6.5/cmake/boost.cmake x sot-dynamic-pinocchio-3.6.5/cmake/debian.cmake x sot-dynamic-pinocchio-3.6.5/cmake/kineo.cmake x sot-dynamic-pinocchio-3.6.5/cmake/dist.cmake x sot-dynamic-pinocchio-3.6.5/cmake/cxx11.cmake x sot-dynamic-pinocchio-3.6.5/cmake/julia.cmake ===> Configuring for sot-dynamic-pinocchio-v3-3.6.5r2 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Warning at /opt/openrobots/lib/cmake/hpp-fcl/hpp-fclConfig.cmake:3 (message): Please update your CMake from 'hpp-fcl' to 'coal' Call Stack (most recent call first): /usr/pkg-2024Q2/share/cmake-3.29/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /opt/openrobots/lib/cmake/pinocchio/pinocchioConfig.cmake:161 (find_dependency) /usr/pkg-2024Q2/share/cmake-3.29/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /opt/openrobots/lib/cmake/sot-core/sot-coreConfig.cmake:149 (find_dependency) /usr/pkg-2024Q2/share/cmake-3.29/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /opt/openrobots/lib/cmake/sot-tools/sot-toolsConfig.cmake:147 (find_dependency) cmake/package-config.cmake:110 (find_package) CMakeLists.txt:39 (add_project_dependency) CMake Warning (dev) at CMakeLists.txt:67 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/zmpreffromcom.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/force-compensation.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/integrator-force-exact.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/mass-apparent.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/integrator-force-rk4.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/integrator-force.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/angle-estimator.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/waist-attitude-from-sensor.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/zmp-from-forces.cpp This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/CMakeLists.txt:25 (add_library): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/dynamic.cpp This warning is for project developers. Use -Wno-dev to suppress it. ===> Building for sot-dynamic-pinocchio-v3-3.6.5r2 In file included from /opt/openrobots/include/hpp/fcl/config.hh:1, from /opt/openrobots/include/pinocchio/serialization/eigen.hpp:20, from /opt/openrobots/include/pinocchio/serialization/fwd.hpp:11, from /opt/openrobots/include/pinocchio/multibody/joint/joint-composite.hpp:14, from /opt/openrobots/include/pinocchio/multibody/joint/joint-generic.hpp:9, from /opt/openrobots/include/pinocchio/multibody/model.hpp:17, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/hpp/fcl/coal.hpp:13:2: warning: #warning "Please update your includes from 'hpp/fcl' to 'coal'" [-Wcpp] 13 | #warning "Please update your includes from 'hpp/fcl' to 'coal'" | ^~~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp: In member function 'dynamicgraph::Matrix& dynamicgraph::sot::DynamicPinocchio::computeGenericJacobian(bool, int, dynamicgraph::Matrix&, const int&)': /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:805:65: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 805 | isFrame ? m_model->frames[(pinocchio::JointIndex)jointId].parent | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:805:65: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 805 | isFrame ? m_model->frames[(pinocchio::JointIndex)jointId].parent | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:805:65: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 805 | isFrame ? m_model->frames[(pinocchio::JointIndex)jointId].parent | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp: In member function 'dynamicgraph::Matrix& dynamicgraph::sot::DynamicPinocchio::computeGenericEndeffJacobian(bool, bool, int, dynamicgraph::Matrix&, const int&)': /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:837:17: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 837 | jid = frame.parent; | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:837:17: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 837 | jid = frame.parent; | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:837:17: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 837 | jid = frame.parent; | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp: In member function 'dynamicgraph::sot::MatrixHomogeneous& dynamicgraph::sot::DynamicPinocchio::computeGenericPosition(bool, int, dynamicgraph::sot::MatrixHomogeneous&, const int&)': /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:872:28: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 872 | (m_data->oMi[frame.parent] * frame.placement).toHomogeneousMatrix(); | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:872:28: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 872 | (m_data->oMi[frame.parent] * frame.placement).toHomogeneousMatrix(); | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:872:28: warning: 'pinocchio::FrameTpl::parent' is deprecated [-Wdeprecated-declarations] 872 | (m_data->oMi[frame.parent] * frame.placement).toHomogeneousMatrix(); | ^~~~~~ In file included from /opt/openrobots/include/pinocchio/multibody/model.hpp:16, from /opt/openrobots/include/pinocchio/algorithm/frames.hpp:8, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include/sot/dynamic-pinocchio/dynamic-pinocchio.h:41, from /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:10: /opt/openrobots/include/pinocchio/multibody/frame.hpp:231:39: note: declared here 231 | PINOCCHIO_DEPRECATED JointIndex & parent; | ^~~~~~ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp: In member function 'dynamicgraph::SignalTimeDependent, int>& dynamicgraph::sot::DynamicPinocchio::jacobiansSOUT(const string&)': /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:1028:26: warning: catching polymorphic type 'class std::bad_cast' by value [-Wcatch-value=] 1028 | } catch (std::bad_cast e) { | ^ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp: In member function 'dynamicgraph::SignalTimeDependent, int>& dynamicgraph::sot::DynamicPinocchio::positionsSOUT(const string&)': /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:1041:26: warning: catching polymorphic type 'class std::bad_cast' by value [-Wcatch-value=] 1041 | } catch (std::bad_cast e) { | ^ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp: In member function 'dynamicgraph::SignalTimeDependent, int>& dynamicgraph::sot::DynamicPinocchio::velocitiesSOUT(const string&)': /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:1055:26: warning: catching polymorphic type 'class std::bad_cast' by value [-Wcatch-value=] 1055 | } catch (std::bad_cast e) { | ^ /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp: In member function 'dynamicgraph::SignalTimeDependent, int>& dynamicgraph::sot::DynamicPinocchio::accelerationsSOUT(const string&)': /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/sot-dynamic-pinocchio.cpp:1069:26: warning: catching polymorphic type 'class std::bad_cast' by value [-Wcatch-value=] 1069 | } catch (std::bad_cast e) { | ^ ld: cannot find -llapack gmake[2]: *** [src/CMakeFiles/integrator-force-exact.dir/build.make:125: src/libintegrator-force-exact.so.3.6.5] Error 1 gmake[1]: *** [CMakeFiles/Makefile2:1406: src/CMakeFiles/integrator-force-exact.dir/all] Error 2 gmake: *** [Makefile:149: all] Error 2 An unexpected error occured. The last 10 log lines are shown below. | cd /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src && /usr/bin/g++ -DBOOST_BIND_GLOBAL_PLACEHOLDERS -DBOOST_MPL_LIMIT_LIST_SIZE=30 -DBOOST_MPL_LIMIT_VECTOR_SIZE=30 -DCOAL_BACKWARD_COMPATIBILITY_WITH_HPP_FCL -DCOAL_HAS_OCTOMAP -DCOAL_HAVE_OCTOMAP -DOCTOMAP_MAJOR_VERSION=1 -DOCTOMAP_MINOR_VERSION=10 -DOCTOMAP_PATCH_VERSION=0 -DPINOCCHIO_ENABLE_TEMPLATE_INSTANTIATION -DPINOCCHIO_WITH_HPP_FCL -DPINOCCHIO_WITH_URDFDOM -Dintegrator_force_exact_EXPORTS -I/local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5 -I/local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/include -isystem /opt/openrobots/include -isystem /usr/pkg-2024Q2/include -isystem /usr/pkg-2024Q2/include/eigen3 -isystem /usr/pkg/include/python3.11 -isystem /opt/openrobots/include/urdfdom -isystem /opt/openrobots/include/urdfdom_headers -pedantic -Wno-long-long -Wall -Wextra -Wcast-align -Wcast-qual -Wformat -Wwrite-strings -Wconversion -pipe -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT src/CMakeFiles/integrator-force-exact.dir/integrator-force-exact.cpp.o -MF CMakeFiles/integrator-force-exact.dir/integrator-force-exact.cpp.o.d -o CMakeFiles/integrator-force-exact.dir/integrator-force-exact.cpp.o -c /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src/integrator-force-exact.cpp | [ 41%] Linking CXX shared library libintegrator-force-exact.so | cd /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src && /usr/pkg-2024Q2/bin/cmake -E cmake_link_script CMakeFiles/integrator-force-exact.dir/link.txt --verbose=1 => Marking sot-dynamic-pinocchio-v3-3.6.5r2 as broken | /usr/bin/g++ -fPIC -pedantic -Wno-long-long -Wall -Wextra -Wcast-align -Wcast-qual -Wformat -Wwrite-strings -Wconversion -pipe -O3 -DNDEBUG -shared -Wl,-soname,libintegrator-force-exact.so.3.6.5 -o libintegrator-force-exact.so.3.6.5 "CMakeFiles/integrator-force-exact.dir/integrator-force-exact.cpp.o" -Wl,-rpath,/local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5/src:/local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5:/opt/openrobots/lib:/usr/pkg-2024Q2/lib:/usr/pkg/lib: libintegrator-force.so.3.6.5 -llapack ../libsot-dynamic-pinocchio.so.3.6.5 /opt/openrobots/lib/libsot-core.so.4.11.8 /usr/pkg-2024Q2/lib/libboost_regex.so /usr/pkg-2024Q2/lib/libboost_program_options.so /opt/openrobots/lib/libdynamic-graph-python.so.4.0.11 /opt/openrobots/lib/libdynamic-graph.so.4.4.3 /usr/pkg-2024Q2/lib/libboost_system.so /usr/pkg-2024Q2/lib/libboost_thread.so /usr/pkg-2024Q2/lib/libboost_atomic.so -lpthread -lpthread /usr/pkg/lib/libpython3.11.so /usr/pkg-2024Q2/lib/libboost_python311.so /opt/openrobots/lib/libpinocchio_parsers.so.3.3.0 /opt/openrobots/lib/liburdfdom_sensor.so.4.0 /opt/openrobots/lib/liburdfdom_model.so.4.0 /opt/openrobots/lib/liburdfdom_world.so.4.0 /opt/openrobots/lib/libpinocchio_collision.so.3.3.0 /opt/openrobots/lib/libpinocchio_default.so.3.3.0 /opt/openrobots/lib/libcoal.so /opt/openrobots/lib/libcoal.so /usr/pkg-2024Q2/lib/libboost_serialization.so /usr/pkg-2024Q2/lib/libboost_filesystem.so /usr/pkg-2024Q2/lib/libboost_chrono.so /opt/openrobots/lib/liboctomap.so /opt/openrobots/lib/liboctomath.so | ld: cannot find -llapack | gmake[2]: *** [src/CMakeFiles/integrator-force-exact.dir/build.make:125: src/libintegrator-force-exact.so.3.6.5] Error 1 | gmake[2]: Leaving directory '/local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5' | gmake[1]: *** [CMakeFiles/Makefile2:1406: src/CMakeFiles/integrator-force-exact.dir/all] Error 2 | gmake[1]: Leaving directory '/local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5' | gmake: *** [Makefile:149: all] Error 2 For details or bug reports, check the complete log file in: /local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/build.log gmake[3]: *** [/local/robotpkg/var/lib/robotpkg/mk/build/build.mk:204: do-build-make(/local/robotpkg/var/tmp/robotpkg/wip/sot-dynamic-pinocchio-v3/work/sot-dynamic-pinocchio-3.6.5)] Error 2 gmake[2]: *** [/local/robotpkg/var/lib/robotpkg/mk/pkg/package.mk:42: pkg-check-installed] Error 2 ERROR: /usr/pkg/bin/gmake: *** [package] Error 2 ===> Deinstalling for sot-dynamic-pinocchio-v3 Removing dependency octomap-1.10.0 Removing dependency Removing dependency py311-coal-3.0.0 Removing dependency pinocchio-3.3.0 Removing dependency py311-pinocchio-3.3.0 Removing dependency py311-example-robot-data-4.2.0 Removing dependency py311-sot-core-v3-4.11.8r2 Removing dependency py311-sot-tools-v3-2.3.5r4 Removed coal-3.0.0r1 Removed digest-20080510 Removed tnftp-20151004~ssl