robotpkg/wip/libmove3d bulk build results

Log for libmove3d-3.22.0r1 on Ubuntu-19.04-x86_64: extract.log (Back)

--- Environment --- LOWER_ARCH=x86_64 _overrides_wip_libmove3d_PKGREQD=libmove3d-3.22.0r1 OPSYS=Ubuntu GZIP_CMD=/usr/bin/gzip _override_vars_pkgtools_pkg_install=PKGREQD PKGREQD PKGREQD LC_TIME=C OS_KERNEL_VERSION=5.0.0-25-generic PKGREPO2DEB=/local/robotpkg/sbin/pkgrepo2deb BULKBASE=/opt/openrobots ECHO_N=echo -n _overrides_pkgtools_pkg_install_PKGREQD=pkg_install>=20110805.9 pkg_install>=20110805.9 pkg_install>=20110805.9 OS_VERSION=19.04 _override_vars_devel_boost_headers=PKGREQD PKGREQD PKGREQD ROBOTPKG_BASE=/local/robotpkg _override_vars_motion_softMotion_libs=PKGREQD PKGREQD PKGREQD OLDPWD=/local/robotpkg/var/lib/robotpkg _override_vars_pkgtools_tnftp=PKGREQD PKGREQD _overrides_devel_boost_headers_PKGREQD=boost-headers>=1.34.1 boost-headers>=1.34.1 boost-headers>=1.34.1 _overrides_motion_softMotion_libs_PKGREQD=softMotion-libs>=3.10 softMotion-libs>=3.10 softMotion-libs>=3.10 PKG_DBDIR=/opt/openrobots/var/db/robotpkg hline="$bf======================================================================$rm" MACHINE_ARCH=x86_64 _overrides_pkgtools_tnftp_PKGREQD=tnftp>=20091122 tnftp>=20091122 FC=false LC_CTYPE=C EXPECT_TARGETS=fetch install package LC_MONETARY=C _override_vars_devel_boost_libs=PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD PKGREQD MAKEFLAGS= --no-print-directory -- PKGREQD.cmdline=libmove3d-3.22.0r1 RECURSIVE_PKGPATH=wip/libmove3d\ tag=Ubuntu-19.04-x86_64 BULK_LOGDIR=/local/robotpkg/var/log/bulk BULKBASE=/opt/openrobots LOCALBASE=/opt/openrobots PKG_DBDIR=/opt/openrobots/var/db/robotpkg EXPECT_TARGETS=fetch\ install\ package _override_vars_pkgtools_digest=PKGREQD PKGREQD CPP=/usr/bin/gcc -E _override_vars_math_gbM=PKGREQD PKGREQD PKGREQD LOWER_OPSYS=ubuntu _overrides_devel_boost_libs_PKGREQD=boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 boost-libs>=1.34.1 bf= _override_vars_pkgtools_pkgrepo2deb=PKGREQD PKGREQD _overrides_pkgtools_digest_PKGREQD=digest>=20080510 digest>=20080510 _overrides_math_gbM_PKGREQD=gbM>=0.9 gbM>=0.9 gbM>=0.9 GCC=/usr/bin/gcc DIGEST=/opt/openrobots/sbin/robotpkg_digest TAR=/usr/bin/tar LOWER_OS_VERSION=19.04 MACHINE_KERNEL=Linux-5.0.0-25-generic-x86_64 _overrides_pkgtools_pkgrepo2deb_PKGREQD=pkgrepo2deb>=1.6.1 pkgrepo2deb>=1.6.1 OWNER_GID=robots PKGTOOLS_VERSION=20110805.9 RECURSIVE_PKGPATH=wip/libmove3d GXX=/usr/bin/g++ MAKECONF=/opt/robotpkg/etc/robotpkg-wip.conf _override_vars_archivers_pax=PKGREQD PKGREQD rm= LC_COLLATE=C OS_KERNEL=Linux ROBOTPKG_TRUSTED_ENV=robotpkg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin _overrides_archivers_pax_PKGREQD=pax pax CXXCPP=/usr/bin/g++ -E CMAKE=/usr/bin/cmake MAKELEVEL=4 DEB_HOST_MULTIARCH=x86_64-linux-gnu MACHINE_PLATFORM=Ubuntu-19.04-x86_64 ROBOTPKG_DIR=/local/robotpkg/var/lib/robotpkg TNFTP=/opt/openrobots/sbin/tnftp LANG=C MAKEOVERRIDES=PKGREQD.cmdline=libmove3d-3.22.0r1 RECURSIVE_PKGPATH=wip/libmove3d\ tag=Ubuntu-19.04-x86_64 BULK_LOGDIR=/local/robotpkg/var/log/bulk BULKBASE=/opt/openrobots LOCALBASE=/opt/openrobots PKG_DBDIR=/opt/openrobots/var/db/robotpkg EXPECT_TARGETS=fetch\ install\ package LC_MESSAGES=C tag=Ubuntu-19.04-x86_64 CXX=/usr/bin/g++ LOCALBASE=/opt/openrobots OWNER_UID=rbulk BULK_LOGDIR=/local/robotpkg/var/log/bulk ZCAT=/usr/bin/zcat PAX=/usr/bin/pax LOWER_OS_KERNEL=linux GPG=/usr/bin/gpg --homedir=/opt/robotpkg/etc/gnupg PWD=/local/robotpkg/var/lib/robotpkg/wip/libmove3d _ROBOTPKG_NOW=0823205242 LC_NUMERIC=C CC=/usr/bin/gcc MFLAGS=--no-print-directory NODENAME=fluffy64-ubuntu1904 _override_vars_wip_libmove3d=PKGREQD --- Running set -e; \ extract_file=/opt/robotpkg/var/lib/robotpkg/distfiles//libmove3d-3.22.0.tar.gz; export extract_file; cd /local/robotpkg/var/tmp/robotpkg/wip/libmove3d/work && cd /local/robotpkg/var/tmp/robotpkg/wip/libmove3d/work && /usr/bin/env CAT=cat ECHO=echo TEST=test /bin/sh /local/robotpkg/var/lib/robotpkg/mk/extract/extract -t nbtar ${extract_file} ; libmove3d-3.22.0/ libmove3d-3.22.0/.gitignore libmove3d-3.22.0/BioTools/ libmove3d-3.22.0/BioTools/Translators/ libmove3d-3.22.0/BioTools/Translators/Ligand/ libmove3d-3.22.0/BioTools/Translators/Ligand/README libmove3d-3.22.0/BioTools/Translators/Ligand/compile_ligpdbtop3d libmove3d-3.22.0/BioTools/Translators/Ligand/ligpdbtop3d.c libmove3d-3.22.0/BioTools/Translators/Protein/ libmove3d-3.22.0/BioTools/Translators/Protein/CApos_diff.c libmove3d-3.22.0/BioTools/Translators/Protein/README libmove3d-3.22.0/BioTools/Translators/Protein/apc.h libmove3d-3.22.0/BioTools/Translators/Protein/apcfrompsf.c libmove3d-3.22.0/BioTools/Translators/Protein/atomhandling.c libmove3d-3.22.0/BioTools/Translators/Protein/atomhandling.h libmove3d-3.22.0/BioTools/Translators/Protein/atoms.h libmove3d-3.22.0/BioTools/Translators/Protein/checkfiles.c libmove3d-3.22.0/BioTools/Translators/Protein/compareNMAresults.c libmove3d-3.22.0/BioTools/Translators/Protein/compareP3Djoint_values.c libmove3d-3.22.0/BioTools/Translators/Protein/compile_CApos_diff libmove3d-3.22.0/BioTools/Translators/Protein/compile_compareNMAresults libmove3d-3.22.0/BioTools/Translators/Protein/compile_compareP3Djoint_values libmove3d-3.22.0/BioTools/Translators/Protein/compile_gen_aaafile libmove3d-3.22.0/BioTools/Translators/Protein/compile_pdbtop3d libmove3d-3.22.0/BioTools/Translators/Protein/compile_pseudodihedral_diff libmove3d-3.22.0/BioTools/Translators/Protein/defs.h libmove3d-3.22.0/BioTools/Translators/Protein/gen_aaafile.c libmove3d-3.22.0/BioTools/Translators/Protein/list.c libmove3d-3.22.0/BioTools/Translators/Protein/list.h libmove3d-3.22.0/BioTools/Translators/Protein/list_proto.h libmove3d-3.22.0/BioTools/Translators/Protein/mathfcts.c libmove3d-3.22.0/BioTools/Translators/Protein/mathfcts.h libmove3d-3.22.0/BioTools/Translators/Protein/pdbFormat.c libmove3d-3.22.0/BioTools/Translators/Protein/pdbFormat.h libmove3d-3.22.0/BioTools/Translators/Protein/pdbtop3d.c libmove3d-3.22.0/BioTools/Translators/Protein/pdbtopsf.c libmove3d-3.22.0/BioTools/Translators/Protein/plot_CApos_diff.gnuplot libmove3d-3.22.0/BioTools/Translators/Protein/protein.h libmove3d-3.22.0/BioTools/Translators/Protein/pseudodihedral_diff.c libmove3d-3.22.0/BioTools/ambmov/ libmove3d-3.22.0/BioTools/ambmov/ambmov.c libmove3d-3.22.0/BioTools/ambmov/ambmov.h libmove3d-3.22.0/BioTools/ambmov/atomhandling.c libmove3d-3.22.0/BioTools/ambmov/atomhandling.h libmove3d-3.22.0/BioTools/ambmov/atoms.h libmove3d-3.22.0/BioTools/ambmov/config_i386-linux.h libmove3d-3.22.0/BioTools/ambmov/config_sparc.h libmove3d-3.22.0/BioTools/ambmov/config_x86_64-linux.h libmove3d-3.22.0/BioTools/ambmov/defs.h libmove3d-3.22.0/BioTools/ambmov/mathfcts.c libmove3d-3.22.0/BioTools/ambmov/mathfcts.h libmove3d-3.22.0/BioTools/ambmov/pdbFormat.c libmove3d-3.22.0/BioTools/ambmov/pdbFormat.h libmove3d-3.22.0/BioTools/ambmov/pdbtopsf.c libmove3d-3.22.0/BioTools/ambmov/prepgen.c libmove3d-3.22.0/BioTools/ambmov/protein.h libmove3d-3.22.0/BioTools/ambmov/removeH.c libmove3d-3.22.0/BioTools/mass_script/ libmove3d-3.22.0/BioTools/mass_script/runmass libmove3d-3.22.0/BioTools/mass_script/runmass_awk libmove3d-3.22.0/BioTools/pdbnm/ libmove3d-3.22.0/BioTools/pdbnm/pdbnm.cc libmove3d-3.22.0/BioTools/pdbnm/readme.txt libmove3d-3.22.0/CMakeLists.txt libmove3d-3.22.0/Doxyfile.in libmove3d-3.22.0/INSTALL libmove3d-3.22.0/animation/ libmove3d-3.22.0/animation/SourceList.cmake libmove3d-3.22.0/animation/anim_charac_traj.c libmove3d-3.22.0/animation/anim_charac_traj_interface.c libmove3d-3.22.0/animation/anim_compute_path.c libmove3d-3.22.0/animation/anim_compute_path_interface.c libmove3d-3.22.0/animation/anim_fft.c libmove3d-3.22.0/animation/anim_interface.c libmove3d-3.22.0/animation/anim_load_file.c libmove3d-3.22.0/animation/anim_load_file_interface.c libmove3d-3.22.0/animation/anim_optim_path.c libmove3d-3.22.0/animation/anim_optim_path_interface.c libmove3d-3.22.0/animation/anim_process_mcap.c libmove3d-3.22.0/animation/anim_process_mcap_interface.c libmove3d-3.22.0/animation/anim_reac_col.c libmove3d-3.22.0/animation/anim_reac_col_interface.c libmove3d-3.22.0/animation/anim_reactive.c libmove3d-3.22.0/animation/anim_reactive_interface.c libmove3d-3.22.0/animation/anim_sample_path.c libmove3d-3.22.0/animation/anim_sample_path_interface.c libmove3d-3.22.0/animation/anim_show_interface.c libmove3d-3.22.0/animation/anim_utils.c libmove3d-3.22.0/animation/anim_walk_controller.c libmove3d-3.22.0/animation/anim_walk_controller_interface.c libmove3d-3.22.0/animation/proto/ libmove3d-3.22.0/animation/proto/anim_charac_traj_interface_proto.h libmove3d-3.22.0/animation/proto/anim_charac_traj_proto.h libmove3d-3.22.0/animation/proto/anim_compute_path_interface_proto.h libmove3d-3.22.0/animation/proto/anim_compute_path_proto.h libmove3d-3.22.0/animation/proto/anim_fft_proto.h libmove3d-3.22.0/animation/proto/anim_interface_proto.h libmove3d-3.22.0/animation/proto/anim_load_file_interface_proto.h libmove3d-3.22.0/animation/proto/anim_load_file_proto.h libmove3d-3.22.0/animation/proto/anim_optim_path_interface_proto.h libmove3d-3.22.0/animation/proto/anim_optim_path_proto.h libmove3d-3.22.0/animation/proto/anim_process_mcap_interface_proto.h libmove3d-3.22.0/animation/proto/anim_process_mcap_proto.h libmove3d-3.22.0/animation/proto/anim_proto.h libmove3d-3.22.0/animation/proto/anim_reac_col_interface_proto.h libmove3d-3.22.0/animation/proto/anim_reac_col_proto.h libmove3d-3.22.0/animation/proto/anim_reactive_interface_proto.h libmove3d-3.22.0/animation/proto/anim_reactive_proto.h libmove3d-3.22.0/animation/proto/anim_sample_path_interface_proto.h libmove3d-3.22.0/animation/proto/anim_sample_path_proto.h libmove3d-3.22.0/animation/proto/anim_show_interface_proto.h libmove3d-3.22.0/animation/proto/anim_utils_proto.h libmove3d-3.22.0/animation/proto/anim_walk_controller_interface_proto.h libmove3d-3.22.0/animation/proto/anim_walk_controller_proto.h libmove3d-3.22.0/bio/ libmove3d-3.22.0/bio/BioCD/ libmove3d-3.22.0/bio/BioCD/BioCDmanual.rtf libmove3d-3.22.0/bio/BioCD/SourceList.cmake libmove3d-3.22.0/bio/BioCD/bcd_hierarchies.c libmove3d-3.22.0/bio/BioCD/bcd_init.c libmove3d-3.22.0/bio/BioCD/bcd_resize.c libmove3d-3.22.0/bio/BioCD/bcd_shordist.c libmove3d-3.22.0/bio/BioCD/bcd_test.c libmove3d-3.22.0/bio/BioCD/bcd_util.c libmove3d-3.22.0/bio/BioCD/include/ libmove3d-3.22.0/bio/BioCD/include/bcd_global.h libmove3d-3.22.0/bio/BioCD/include/bcd_hierarchies.h libmove3d-3.22.0/bio/BioCD/include/bcd_init.h libmove3d-3.22.0/bio/BioCD/include/bcd_resize.h libmove3d-3.22.0/bio/BioCD/include/bcd_shortdist.h libmove3d-3.22.0/bio/BioCD/include/bcd_util.h libmove3d-3.22.0/bio/BioCD/proto/ libmove3d-3.22.0/bio/BioCD/proto/bcd_hierarchies_proto.h libmove3d-3.22.0/bio/BioCD/proto/bcd_init_proto.h libmove3d-3.22.0/bio/BioCD/proto/bcd_proto.h libmove3d-3.22.0/bio/BioCD/proto/bcd_resize_proto.h libmove3d-3.22.0/bio/BioCD/proto/bcd_shordist_proto.h libmove3d-3.22.0/bio/BioCD/proto/bcd_test_proto.h libmove3d-3.22.0/bio/BioCD/proto/bcd_util_proto.h libmove3d-3.22.0/bio/BioEnergy/ libmove3d-3.22.0/bio/BioEnergy/FORM_bio_energy.c libmove3d-3.22.0/bio/BioEnergy/SourceList.cmake libmove3d-3.22.0/bio/BioEnergy/bio_2amber.c libmove3d-3.22.0/bio/BioEnergy/bio_allocations.c libmove3d-3.22.0/bio/BioEnergy/bio_coldeg_planner.c libmove3d-3.22.0/bio/BioEnergy/bio_minimization.c libmove3d-3.22.0/bio/BioEnergy/bio_nmode.c libmove3d-3.22.0/bio/BioEnergy/bio_rrt_E_minimizer.c libmove3d-3.22.0/bio/BioEnergy/bioenergy_common.c libmove3d-3.22.0/bio/BioEnergy/blocpdb.f libmove3d-3.22.0/bio/BioEnergy/blocpdb_.f libmove3d-3.22.0/bio/BioEnergy/data_init.f libmove3d-3.22.0/bio/BioEnergy/data_init_.f libmove3d-3.22.0/bio/BioEnergy/diagrtb.f libmove3d-3.22.0/bio/BioEnergy/diagrtb_.f libmove3d-3.22.0/bio/BioEnergy/diagstd.f libmove3d-3.22.0/bio/BioEnergy/diagstd_.f libmove3d-3.22.0/bio/BioEnergy/include/ libmove3d-3.22.0/bio/BioEnergy/include/Energy-pkg.h libmove3d-3.22.0/bio/BioEnergy/include/amb_eln.h libmove3d-3.22.0/bio/BioEnergy/include/bio_2amber.h libmove3d-3.22.0/bio/BioEnergy/include/bio_allocations.h libmove3d-3.22.0/bio/BioEnergy/include/bio_minimization.h libmove3d-3.22.0/bio/BioEnergy/include/bio_nmode.h libmove3d-3.22.0/bio/BioEnergy/include/bioenergy_common.h libmove3d-3.22.0/bio/BioEnergy/mini.f libmove3d-3.22.0/bio/BioEnergy/mini_.f libmove3d-3.22.0/bio/BioEnergy/parser.f libmove3d-3.22.0/bio/BioEnergy/parser_.f libmove3d-3.22.0/bio/BioEnergy/pdbmat.f libmove3d-3.22.0/bio/BioEnergy/pdbmat_.f libmove3d-3.22.0/bio/BioEnergy/pdbmat_nw.f libmove3d-3.22.0/bio/BioEnergy/prepmat.f libmove3d-3.22.0/bio/BioEnergy/prepmat_.f libmove3d-3.22.0/bio/BioEnergy/prepmat_nw.f libmove3d-3.22.0/bio/BioEnergy/proto/ libmove3d-3.22.0/bio/BioEnergy/proto/FORM_bio_energy_proto.h libmove3d-3.22.0/bio/BioEnergy/proto/benergy_proto.h libmove3d-3.22.0/bio/BioEnergy/proto/bio_coldeg_planner_proto.h libmove3d-3.22.0/bio/BioEnergy/proto/bio_rrt_E_minimizer_proto.h libmove3d-3.22.0/bio/BioEnergy/read_inp.f libmove3d-3.22.0/bio/BioEnergy/read_inp_.f libmove3d-3.22.0/bio/BioEnergy/read_parm.f libmove3d-3.22.0/bio/BioEnergy/read_parm_.f libmove3d-3.22.0/bio/BioEnergy/rtb.f libmove3d-3.22.0/bio/BioEnergy/rtb_.f libmove3d-3.22.0/bio/BioEnergy/rtb_to_modes.f libmove3d-3.22.0/bio/BioEnergy/rtb_to_modes_.f libmove3d-3.22.0/bio/BioLoop/ libmove3d-3.22.0/bio/BioLoop/SourceList.cmake libmove3d-3.22.0/bio/BioLoop/bio_ik.c libmove3d-3.22.0/bio/BioLoop/bio_loop.c libmove3d-3.22.0/bio/BioLoop/bio_track_loop.c libmove3d-3.22.0/bio/BioLoop/proto/ libmove3d-3.22.0/bio/BioLoop/proto/bio_ik_proto.h libmove3d-3.22.0/bio/BioLoop/proto/bio_loop_proto.h libmove3d-3.22.0/bio/BioLoop/proto/bio_track_loop_proto.h libmove3d-3.22.0/bio/BioLoop/proto/bloop_proto.h libmove3d-3.22.0/bio/BioPlanner/ libmove3d-3.22.0/bio/BioPlanner/SourceList.cmake libmove3d-3.22.0/bio/BioPlanner/bio_expand_lig_sc.c libmove3d-3.22.0/bio/BioPlanner/bio_ligandbased_rrt.c libmove3d-3.22.0/bio/BioPlanner/bio_localpath.c libmove3d-3.22.0/bio/BioPlanner/bio_planner_util.c libmove3d-3.22.0/bio/BioPlanner/proto/ libmove3d-3.22.0/bio/BioPlanner/proto/bio_Algo_planner_proto.h libmove3d-3.22.0/bio/BioPlanner/proto/bio_expand_lig_sc_proto.h libmove3d-3.22.0/bio/BioPlanner/proto/bio_ligandbased_rrt_proto.h libmove3d-3.22.0/bio/BioPlanner/proto/bio_localpath_proto.h libmove3d-3.22.0/bio/BioPlanner/proto/bio_planner_util_proto.h libmove3d-3.22.0/bio/BioPlanner/proto/bio_test_traj_proto.h libmove3d-3.22.0/bio/BioPlanner/proto/bplan_proto.h libmove3d-3.22.0/bio/BioStructures/ libmove3d-3.22.0/bio/BioStructures/FORM_aaa.c libmove3d-3.22.0/bio/BioStructures/FORM_files_selector.c libmove3d-3.22.0/bio/BioStructures/FORM_joint_lig.c libmove3d-3.22.0/bio/BioStructures/SourceList.cmake libmove3d-3.22.0/bio/BioStructures/aaa_rw.c libmove3d-3.22.0/bio/BioStructures/biostruct_util.c libmove3d-3.22.0/bio/BioStructures/include/ libmove3d-3.22.0/bio/BioStructures/include/BioSTR_pkg.h libmove3d-3.22.0/bio/BioStructures/include/FORM_aaa.h libmove3d-3.22.0/bio/BioStructures/include/FORM_files_selector.h libmove3d-3.22.0/bio/BioStructures/include/FORM_joint_lig.h libmove3d-3.22.0/bio/BioStructures/include/aaa_type.h libmove3d-3.22.0/bio/BioStructures/include/psf_defs_bio.h libmove3d-3.22.0/bio/BioStructures/include/psf_type.h libmove3d-3.22.0/bio/BioStructures/include/psf_util.h libmove3d-3.22.0/bio/BioStructures/proto/ libmove3d-3.22.0/bio/BioStructures/proto/FORM_aaa_proto.h libmove3d-3.22.0/bio/BioStructures/proto/FORM_files_selector_proto.h libmove3d-3.22.0/bio/BioStructures/proto/FORM_joint_lig_proto.h 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